NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10022026

Scaffold Ga0315293_10022026


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10022026 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5690
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F016246Metagenome248Y
F025916Metagenome199Y
F037053Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0315293_1002202610F016246N/AMSQLDMFPLIRRRLTHAEILAGFAELLSAVKAMQFWEPYP
Ga0315293_1002202613F025916GGAGGVSTHLTRPLLACRLRDCGALDCPVCAGAEAARLYREQAECDHDEHDHGICLACGADITDTLAGQAEDAADAAQDR
Ga0315293_100220262F009945AGGMSTALATFKREHGVATHRVTGAGHRYPWMAFFSTITMNDGTRRAFTELAHEYSMADLMRRNKVADADTELEACQFLAERNGIPWPADEPKKRKSKP
Ga0315293_100220263F037053N/AMNTPTVDDIIADLESRGLNWSLDHTNRLIEARVWDWPNVIARYRPVTVEPLAKMLATAAFDVDWTKYPIL
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