NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10327722

Scaffold Ga0315293_10327722


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10327722 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1222
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050981Metagenome / Metatranscriptome144N
F078382Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0315293_103277222F078382AGGMTLRSAMRQTLDLLVVMVAVLLSRTLWVTIGGLYVVWTVHWSDVATLYTLENAAQIQSFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDKLNPKDS
Ga0315293_103277223F050981N/AEIVLTIKHLRALTADAIASADRAIASEARVQASLTDATSSLVHSQNQLLKVDQDIRNLQAEAEEQTRIAVGAKADAVKAQRLADHRGNLLGWLGAGLLCIVCLKLTSILPPPYGFLLPVAAIPAGYWLARLLL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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