Scaffold Ga0315298

Basic Information
Taxon OID	3300031749 Open in IMG/M
Scaffold ID	Ga0315298_1009098 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Washburn Hot Springs, YNP, Wyoming, USA - WHS_1_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031749 Open in IMG/M

Scaffold ID

Ga0315298_1009098 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Washburn Hot Springs, YNP, Wyoming, USA - WHS_1_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12389
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (39.13%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

12389

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (39.13%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F076264	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N
F087445	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315298_100909810	F080247	N/A	MIVWGKLIDCLIDTDVNYLNGELFNKQFRVKGKFLAFGNLYTLERATPEGESVQICVPIDATFMAYYQGMVAVMSFYFRDKDIYANISLTDPDTIKEFIIMSTYYKKYGVSIPNVLDKIMYRKVPM
Ga0315298_100909811	F061983	AGGGGG	LKKFVFKVKVVPVKIFDEEGVLSEKEFEEVKKTMKYKGMKVLEIKDLGYDGFWNVVHYYELKAVSEGGGQFDCYYGDVIDVEKLKSVGAIVIKEGDTEPVRTMKTLVAKWYNKKVVEEEKAYEVCNTFVT
Ga0315298_100909813	F085905	N/A	MEEQLSFPSSRLSQFDYVGMNAYWLNMRLKYFTDPMLYAVATGIWAINLMDDVDIAETGTQKNFEYGLIYIFSNSRIDTLFIVALTHYFNVKREKEYYLSIPMDAIQNVMKSLIEFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLHGLYGRDAEAVFNGVVARHLLPYSILEVIRRHMRK
Ga0315298_100909814	F063848	N/A	VAKKRRSVHDPMLSVIHYQEQLEKMAKAYEQSASRRNQRAVNGFTMLKQVQQTVRDYLNEASDAMKKPIIAQLSVEFLGVAMAYLRGSNEGLNAYALSGRVAQIATLKATGIISSTELTCAQVGEIINGMLKKISGMTEDPLTFTEHDGICEATPANPMPKLSVTSTSTGYTVSLSDILKAKTPEEVLMGK
Ga0315298_100909817	F087445	N/A	MTASASKPTDELVQRLLNMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQMKFNNLLNGLAMNAPKVKEVMENAKRNRKPIDRLADMFMDVMETMLKSKAMSLTDEDKAKLKEKLKEVMESEE
Ga0315298_100909819	F076264	AGGTGG	MSSISNAIQNMVNGLQNLFVALVDVFANAINAIGNTLASLAQPIGYLVGVLAVFGSLIAIIYYVFRGRGGVSGLIGGIRSFFTSFL
Ga0315298_10090985	F075084	N/A	MYALGVDYARLIEFTNQNPTGKLFRVGARAMVYAKRLLASWYGYDTGVLIERALRTILRWSINYCKLMKRLGLESEYCKRYILYDEVPCELASVFTVDIAYADIIHMIANYNNKTVSKIFTKMTEMCSTYEVRG
Ga0315298_10090986	F080245	N/A	MIFVWSARVTIPGFRDEIFVSPALINTYVEITEGVYEVGMFMVPHRGHALLFLPTMVIKVDDELMKNLEQTSIEDLNTPLNTIEHVFT
Ga0315298_10090987	F087442	GAGG	MMREGLIKAGNLVIDCKPCYVSGTGFTKDDVYVVSEGTVVFKWYDKIALVTVSDEGVKVTLLDIIDVRFLVERNENCMVTKL
Ga0315298_10090988	F081547	N/A	MPYLRGVFVNFNEETYYLSCGIVKGGNLDTETYTISNPELMMVKLGRDLYIVTNQLRLLIPVEPIRVLLSSETSKVYNEVLSQGNEVRPA
Ga0315298_10090989	F076263	N/A	MLSLEDLSAILDDLEDLCARLPEGVNFHPILEIHRNYANEEATYIKFDCRNHRYILTIVRTGIAKTTRYSSREELFRRLFPEYTEEIWGEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315298_1009098

Overview

Ecosystem & Geography

Associated Families

Sequences