NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315298_1049291

Scaffold Ga0315298_1049291


Overview

Basic Information
Taxon OID3300031749 Open in IMG/M
Scaffold IDGa0315298_1049291 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Washburn Hot Springs, YNP, Wyoming, USA - WHS_1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3279
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070317Metagenome / Metatranscriptome123Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0315298_10492913F070317AGAAGMTQITASNMSPLEELKELNLEKVIKDAQEGEVCVVNKILKGKLTDLLPLVRDPANLSQRAMDFIQRRGEDIFYLFQCTTREGRNVKLLVRQSFDPKSTFYQLMKKYHTIKVGDEITVFYNPEKRRYDFLL
Ga0315298_10492914F077502GAGMTAQGTDVAHIVLWIEKNLPEEGKLSELIDNIFSLITEIILNNLSQGRQPISFTSVREIADAFKEMIYRSIEQSVGVLTEDVKEQVDAYFFKKLSEIYSKYYE
Ga0315298_10492916F077499GAGMRDVFVFPYESLKAVEYPKITNAEIIFILTITVPIRDHPSSDSSMDEKMRFLSTYMPLEFQKLQYMKAIDRALDILKYSLYSRKDNVLFEIANKINDMYDVKQLIDKIKDVECTKDINQINVTLTEAKRYIYPDLSLSKYASTQAKQLNIRKYEYYARVFQCYIEQDKNLDMLTLFRISNLVYNYIRLNNLSNIVEKIEFKNDKIAQLMEKIKQRVKITLEAMTDRRPIEPDTNILNSITVRIKEIDLG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.