NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318494_10020850

Scaffold Ga0318494_10020850


Overview

Basic Information
Taxon OID3300031751 Open in IMG/M
Scaffold IDGa0318494_10020850 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3256
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006822Metagenome / Metatranscriptome364N
F009358Metagenome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0318494_100208501F009358GGAGGMFKSKAPEKDKDVAANAAEVVQQQHLVVEPLPARWEPTTQAATRSCIGSGMSIVGNIECNGPAQV
Ga0318494_100208502F006822GGAGGVTDILTNDEISLLRSLEKKSRTITGNFTHKRYDRLETKGYIKRSSQPPSMQDILYEVTDAGKAALRAAGGAAG

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