NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318494_10495251

Scaffold Ga0318494_10495251


Overview

Basic Information
Taxon OID3300031751 Open in IMG/M
Scaffold IDGa0318494_10495251 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000427Metagenome / Metatranscriptome1151Y
F006474Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0318494_104952511F000427N/AIKAFVAEGISRDEIANRLGVTVGSLQVTCSRLGISLRRTTFRSCSERRPADVRPGSVGFAHVREQREASQPAARVGPVASFAIMMRYKGEEQATDIPLPSPAIEVLALEAISRDLGIAELIGQSLVAAINKDVIHKILRD
Ga0318494_104952512F006474N/AMEVDMPGTEDDEPEMSFRRGYQQGVIDIFCTIERFLDPATREVLQSWIEKDVYIWRVKAMLGRPPKWRLNMLAGPRSAP
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