NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000011

Scaffold Ga0307477_10000011


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000011 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)310068
Total Scaffold Genes251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)191 (76.10%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001133Metagenome / Metatranscriptome767Y
F026357Metagenome / Metatranscriptome198Y
F034257Metagenome / Metatranscriptome175Y
F047794Metagenome / Metatranscriptome149N
F055484Metagenome / Metatranscriptome138Y
F087514Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000011149F047794GAGGMEHFSERPWADFVRGISGPEISKDIKAHLAADCSKCKTALDAWSRVQRLASAEDTYAPPENLVRLVKLGFATKTAHQPRTSPLENWTLANLVFDSFAQPLPAGVRSAALSAWQVVYESEGLTVDLRFGHRGRAKTVHLVGQVFDKRAVRVWQSNASIQLSTEQGELVATTAVNAMGEFHIEFEAHDRHLWLLVKAAERTAVRIPLTNPR
Ga0307477_10000011177F001133AGGTGGMWIEKLTDGVLGVDTPIGPRYVQPNLLQRAYLIWTFRNFFSLPQQVLRPWERRLIDRLWSENRFVSVSVAGAPDRPVIGKIERRASAQAEVLPIRKPISGSNPAVAEQSREAASA
Ga0307477_10000011178F026357GAGMKAGSKLELVIMLPPGLGLGPGGWTLCEASVVRVEESEGKGMGVAATIDRIDLLPEIG
Ga0307477_10000011191F055484GAGGMDTNKAAYWIALGVLALGLNSEYQHGRFVALHRVSEYASSALCRMATRAEQTLAVARVIASRERFPVDGLVAASGGAEMARAQRELLREQARDEAELLRDRLREQAQADAIRAQAETQRAEVEQIRLRARSQLRLARMVDRRVTVVCPKTGVRIAVNARMRLAEVSPDVEDSF
Ga0307477_10000011194F087514GAGGLAQERPVRHMGVGWQIFWFLFHLAVVYAIVNVCTPLLARWTRDTLLPLLQHPSSSGRFEYLYSHLFVFSFIPGFVAGLVNARFRHKAAQFVWLLPAVILAYKFATFPSPSVLQGQLSAAFHQYFGGGFTIPDFRNWHEFLSIAGSNSDMARGRAQTTFTAPLYAGVGYSLAAWTGLRTELNRKIAERVTTWEESRFGPHS
Ga0307477_10000011209F034257GGAGMRKSSRLGLLVMAGILAASPVFGQGKQPRVLRRPPAVAEVGTDTAQPKVPDGSGASCILDGLPMLLSLHHDTEVGTNKQVDVFMLVIEMQVMNSDGNLEPVGLQIHNYYTRYAQDPKNAFNPYNARDCVKWFYLQNHAMKMRNPKLGTWPYIELATAVGARVIQTNEDGQVWWSDDIQCWGSSDRFPPF
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