NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000016

Scaffold Ga0307477_10000016


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000016 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)288024
Total Scaffold Genes283 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)203 (71.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000151Metagenome / Metatranscriptome1897Y
F000477Metagenome / Metatranscriptome1097Y
F001209Metagenome / Metatranscriptome747Y
F002852Metagenome / Metatranscriptome526Y
F004195Metagenome / Metatranscriptome449Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000016125F000151GGAMDVTPHSNGTERSLAAGDGHVKEVLGAAHEELKHLLGQRAEIIKRIGTIKQTIVGLANIFGDEILSNDLLELVDRKTSTRQPGFTKACRMVLIEAEVPLGAREVCEHLRRRTPSVLLRHKDPLASVTTVLNRLVEYGEARSVVRENGRRAWQWVADPLSNAEENAASYVSTKN
Ga0307477_1000001616F004195N/AMTHFPQPQSDRRATRVHVGSAISALVTLEDGHRAKAKLQTISITGGLLRLPKALDHGDFVEVAFQTQSGPVQGMAEMLNPLNGAREGVLQPFRFIALGDDDHRNLRMVVDAVSDRSFIGIRSNQFAAPKGQ
Ga0307477_10000016199F001209N/AMKIKLKAAPDVLVRNEGTVFLFCPLTLRAKEWIDEHVQSDSQWFGNALVVEHRYAWGLAEGMKDEGLLLA
Ga0307477_10000016217F000477GAGMPPVTRKFTLEIDAQLYGELVAVADQNGQTKRHVLEQALQFYLRNVVPSEDLVRPEVTDAFDQSVARNRDLLRRLAK
Ga0307477_10000016276F002852GGAGMQDESKASFAVIRHNVRTYESGGVMIVIKGRTTAESALGQFERSQTSEDRHAGWRYFLEKTDLKAGMNPAEATTLRQMRLEVRESEAQQLSDQVPFTPRSN
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Institute for Fundamental Biomedical Research
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