NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000019

Scaffold Ga0307477_10000019


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000019 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)272165
Total Scaffold Genes251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)190 (75.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F000828Metagenome / Metatranscriptome872Y
F001535Metagenome / Metatranscriptome675Y
F011326Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000019106F000078AGGAGLESLYCLRCNRELETGHKSVALYMFAQTVGIRPRQKSMAQRICFCPQCSVSLAMGPPPEGALNVAAWKMIRELVSADPALNDAAWETLRGIVGLLPATGTEGGARPVNGGGYFEF
Ga0307477_10000019121F001535GGAMETQSERNPESNPAKVGEHIKGAHQILKTLQEKIGERHPEITTAITKLELALYDLEIDTGGLL
Ga0307477_10000019200F000828N/AMRNSKKSIFDEQYRVVAVENDRLMVRGVMSGELLTIVNPAPGTILNQADYPIGKLIALTDPSASPVN
Ga0307477_1000001958F011326GAGLPEIAHTPDTVPEAPAGPRRRTVLASGLLCGVLALVVLYTNRRAFFSPLAIVVVAAIGLAALLLQLRFHNRTSIEAVHPPLWLNVLGILFALGALFADLIRMSSQTAEFMALGAVGSFGISGAIILHAFRKRSPDPDRVPKN
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Institute for Fundamental Biomedical Research
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