NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000054

Scaffold Ga0307477_10000054


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000054 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)175404
Total Scaffold Genes154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (75.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F009172Metagenome / Metatranscriptome322Y
F018063Metagenome / Metatranscriptome237Y
F020212Metagenome / Metatranscriptome225Y
F021504Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000054147F021504GGAGGMGRIRLAVLIFASLGLLLCVSQEAAAQSSNRLDRRNEERGDSTSDARSLPRPPQPRPRGPEIFYCETPDTSCRTTQDTFAIADLRDLFVFVVWPGVSGQHVQTVEFLLPGGSIYSSNKTRFSIGGSPVAAMAPAFKNEVSPVPPAPHLIAEANKVHPEGIPTLLMKSRGDSSILTVLPVGGTYITQRNLSGTWRVRVLLDDRLALESEFTLVPREPPPAAKEKEERER
Ga0307477_10000054148F009172GGAGMAEDHKTSSSTPAAPGAKKPYTKPSVTSEPIYETLALACGKLPGQGGLCNASPRRS
Ga0307477_1000005427F000043N/AMLYQLGWTTLPGLRGLSCREFRAAATTTPDYERGVAIEFASEAERDAFLRQLEAHFAARRFTNAADAFDDVKAYVLEYAAKR
Ga0307477_1000005462F018063AGGAGGVQTKLKDNGRMWLWGFLAVIVMSQLYVVRELLAAFALFALGFATIAFVVASLYMLQHCWELAVARLADIRRPVMNVASVSRENQKVA
Ga0307477_1000005467F020212AGGMWEDSYYCWVVVCKNYWFHIRQNIFFGHKIPLGETDVYAPPPDLNGPFRVRCDECGKEYSYKPSEVRRFEQELPESFTPHPLFR
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Institute for Fundamental Biomedical Research
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