NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000066

Scaffold Ga0307477_10000066


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000066 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)156022
Total Scaffold Genes134 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)107 (79.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000529Metagenome / Metatranscriptome1047Y
F001456Metagenome / Metatranscriptome691Y
F002013Metagenome / Metatranscriptome604Y
F003283Metagenome / Metatranscriptome496Y
F040214Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000066101F040214GAGGMDWSGGESQEQQAQPGALPPFPRIWIGYVLGVATLIAEMVAITLHPELAKEPLLIPPLYLFLANFISLVYWLVCVYEYHVILAQATAGGYPIKPLRAAWFHLIPIYGLYWVYQWPRELARFVNARLQVPLMRPDRTGLAVFIAFVVFLVLDRGLGMILLFWSASHLSRCLRLALESRTAQAPGSPPGQLPFS
Ga0307477_10000066111F003283AGGAGMSSGPKGTEQDSIEQCSVCGRIEALFELSGRPEKACLECSADLATAILLSTEIDAATLAGRSTNALVSEFSEISSRMLERSQSSEPGNG
Ga0307477_100000662F002013AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSMINLQFMLEMRKLEEDDESRFEEEFNVWLSDEPLTNDEICQLMRGVERERKLEGKPPLVQFLPRSKRQKKGPKKTEGVHSSRKPNSPMPSAPGVESIVPETAHA
Ga0307477_1000006628F001456N/AMTTAPSPANSESQRNGTSLREVFIGALFAVLLLVPKLLGLRRNAKSWMLFRIFLGLVGAFLVIVPVGMGNSFFLSLLGLAMFTGAILLPPAKPSTNTDDKACELGALVVVNGGRFKLGQAPSFAAQLFVGPDRVSVLDSDFRSYLEIPVSEITSARAEESHGRWYLRIEWANKTATFLYRGVFAEHLARVAESTLHGIMRPALPVIPQRRAASA
Ga0307477_1000006689F000529GAGGMFNAMLFAISIVALSQFAIYYWRAVLAGVAAQPVSDRVLTAAHVENGRLTSAHFETLAGLHDLTPDLFPHRGGLGLVRFYFRAVEALNSIVGSRMPGVAAWSERERVVCARYAAVQVGRRLQANLELAASLRSC
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