NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307477_10000073

Scaffold Ga0307477_10000073


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000073 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)146445
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)101 (84.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011184Metagenome / Metatranscriptome294N
F015367Metagenome / Metatranscriptome255Y
F051297Metagenome / Metatranscriptome144Y
F101701Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_100000731F011184N/AGILEAFLAVYGLVSKQRKRGPMAPYLLTTLPSQKQTEAKQSDEIVNDDVQRAVNRTIHTLKNADSETDRPIHTARLLYMVLDNEKFLNIEKLNEALRPYWPILWRVCARGHYLRHEEPLRDGAFWGADSRLRNPGPLPSFQEGEYRLEFHRGPETEFSTWLYFPGRFALQYPLFDYPRIAELRTILEGLSLRDTLIFWEGRYFLASTWFDEEEKVGVVFRSRDHGIALTFHHDDWQAIKSLFRRGWQAPEVVRLWNALAREYGEL
Ga0307477_10000073118F101701GAGMLSGVESMTTIVLVGVASFLVVLAIIVKARAAKPKKPEKWEKALIVKRLLALSEREDIVNGISRQQPVSQSPTPRRRAAAASTSSSRTVRPA
Ga0307477_1000007347F051297AGGAGMKKSLFTVVLTMTCLLGLGLSAHAQDASGVVVKVPFEFVAGDKTLPAGTYSVGRVSPATHALIIAGKDNGALALVLPIVPGGDSAGRTDLSFERVGGKYFLSKVATPAGVYTLLTTREMTKLAQMNDHSVTSSSGN
Ga0307477_1000007360F015367AGGAGGMKTKYSQYLAVLSTLVLLSPLGAWARDKAHSVEIPYVVQVGGTRVTPGSYKVEWQGRGPAVEVSFSQYGKTVVTVPGTLKTNDDQVKQDAIVTEATSADTSTLKEIDFGRQKEALVFDQTQNQVGQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.