NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000176

Scaffold Ga0307477_10000176


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000176 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)88892
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (75.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001441Metagenome / Metatranscriptome694Y
F003875Metagenome / Metatranscriptome464Y
F008964Metagenome / Metatranscriptome325Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000017640F008964GGAGGVETITVAASRNSALSLSEMELLVGSAIVVVVLVSMLLARVLRARRHPQPRA
Ga0307477_1000017666F001441AGGAGMNLSLRDAFARFGAKPSNRLRSLSAMAADGALVLNCSHAHFRHPSRGVLRYEDRLSRQSPGSSDTELLGRHLTLARAGALPVRMVVTSRADDKIAGGSAGCHVRPDLIGKVAEFDGDHFVVDFTRAEVMRPEASSRRR
Ga0307477_1000017668F003875AGGAGMAWRKSGLFHPVEEILVMTCDVCERDIGYEDGSRPHDHFRISRHPNPGAIDDQEPAVLICSRECLRAFAAKTPGPDRVLSFSDRRRPRGKRAS
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