NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000190

Scaffold Ga0307477_10000190


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000190 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84523
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (74.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005907Metagenome / Metatranscriptome386Y
F006058Metagenome / Metatranscriptome382N
F014490Metagenome262N
F047597Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000019014F006058GGAGGMSIGPMDPIDVAFNAPLKCSPEEKRHFADPALHEAQNSNFPSALEIVTHGLDAHPASEGLLFLKAYFGYKIADAMSNELSSYPKVIQPIGNGALMIDGAMTSRMLDKFQEIVSTLTDAEESVNELLQVNSKNAEIVEFRTYIDLKRQQLNKESETMRAAFNRGPQLAGNFCRGCKKSISFETQKIVLRSSQDSRLEAWHSGCFQTVKN
Ga0307477_1000019037F014490N/AMGRTVLELRCVKCGTEFEKSFEQKRGSSDLTEGEMVKLGDSICPNKCGGDWFSIQKHHSIRKFKRHY
Ga0307477_1000019082F047597GGAVLLVAFSFLVLSISILAYGERRSTRYLSLSLAFTFLTLSQIVELVETLFLSSQLILIPATGIHLSHFFDFLMLSSFSLALLTRPGENLGSGK
Ga0307477_1000019087F005907GAGMQRVGTFLGPVGLFFISLGYTVAAGIARLFVTLESVCTSHCPVFRVEGFRFHHMYYGFLLLAVAVGVMLIAADARTRWDSGLVMGIGIGLIADEIGLLILRLPYWNILSFGIVAGGALILYMLTIATSLKAGLSDFHFVDRYQFLALLGILFGFTGFLFFDRPVRMVVEGAAISSWLVSIFLMTKYGRRHFFLLRHAPLDYGPGPR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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