NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000224

Scaffold Ga0307477_10000224


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000224 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77615
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (69.14%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002500Metagenome / Metatranscriptome553Y
F003037Metagenome / Metatranscriptome511Y
F005700Metagenome / Metatranscriptome392N
F007915Metagenome / Metatranscriptome342Y
F027149Metagenome / Metatranscriptome195N
F034134Metagenome175Y
F086673Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0307477_100002242F005700AGAAGLNLRHNGALTYRTEYFLGILSLIPLLELGAIKGLGWLTTILVVYIGVPLLIWSLLVNHLASFVVRLVCRFRESSGHQYYFERQIGMPGVSRRILRDLRVLFFVFLLSALIVPLVTNVSPGDLASASNVSNAFIYIAIFLLAVPSSIHVLLWVLEDSGLRCHNTTRVTVTVPAQWMSRWLSSAGGIGAFISFALTLGGNLDRALSLALTLFVSLLPSCILAPTLFYRRLEPGIIAKLRQSKAAVKMAQLFSQPIGPGVPIVPSPTAPTLRAQKGPEETRKT
Ga0307477_1000022421F034134GGCGGLITIVGIISTSMGLWIVQADFDAFRGLARRVDGWIFTAPLVLAAIDIYLTLIVLTTSSQIVELNPFVSSAIGIGAAAIVPFMVSYLALSQGLGLFMMRVGSYLFSNSKSRYLPFVLICGAASFGPASNLLLLVDSSAGQFTYLVAGLGSTLISLILFMKINRAEVESRQG
Ga0307477_1000022423F086673AGGALAVLEQTVQRNEKSANSSTISVPPLFSEAVPSKSREEISELAKHLAHSVVTGYLEHDRGHLDKSVEGFFQVFLNLFTKVSPLRARRAAELYVESLVKQDEIENLPMRSREQIVSDPMWGDLRRIFLELSRTLGIPDSYADETTDFFRYHGVGDSRYMIHCMASENLFMTEAIGNSYWSKILGSLLLLLTECHDKHDSVGLETGIEFATKYYEIILRAKNSIIQKAPMITA
Ga0307477_100002243F007915N/AMAEMAKQPLPSSTLRSYAMIGIVLYAFGVLLNEIGNGLTQLWLVPYADTISALGFVIALYTATLSGVGTRLMVVLGLIYGIGTFYVSEPDATYVASGLKIGSYNTTHDVGLGLIGFTLVLLIALAFYLTRVKRARAVMPRQDPGSAS
Ga0307477_100002244F003037AGCAGMFVEFKCPLCGKDLDDDKTMANFMVCSDQSHGVLRFFTGDGCYFTTNEKVAEELMKKGRRVHIVDPKEFFGTQTMDLE
Ga0307477_1000022445F027149GGTGGVYARLIFLHDLHGTGMSELELLPGNMVECAWCKDSKPVSETTWFMPEPGEKSVRLCGFCYEEARKQVLLIRHVKRRGEFPVEAAS
Ga0307477_1000022474F002500N/ALAITADDITLSVISAIIGLAVTLPVTYLIVDRVVANNEKKKLTPVEKLAKERLRAKLGVGFLTTFLVTLVIDITSAVREKAPIPEEVLSLHIEKLKTAQSDLETLLGVYSNVLDVEIARLTSDVILQIEHLQEDFEYLAELSPRPPTPSHATHIEQLLLKAVHLTKQELVALGTDNQQIRALEDWLTEYTKQSRPAPRKETPIEVRGGHTIS
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