NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000294

Scaffold Ga0307477_10000294


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000294 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62182
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (73.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002993Metagenome / Metatranscriptome514N
F006839Metagenome / Metatranscriptome363Y
F014244Metagenome / Metatranscriptome264N
F016129Metagenome / Metatranscriptome249N

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000029420F006839N/AMDTSLDPDMIPYLQEACYYLRKKGLTFPELSKALEITPDQATELFEEYASKIASGAASENEVDRNLWEDIRNDSFGNEKITFARDDGFYHCRRSDLELMESSALMSIFESSRKFLDFDMYKRYLNTKPPVGYDPMALQRQVKRAIELVQDILKQRWVKESGTEASSAPSDHSQTE
Ga0307477_100002945F016129GAGLGVEEEAQPKKSGSRRYVETMLGWPSEESAGGTLYETTLFTSILEYAIVLFFGVWLITEYFYNIYEQQYFGSFDPVFLVIVLMIASGYGFMRLITSIRTQIRPSKKKTRPEDDY
Ga0307477_1000029466F014244AGGVAFGEQTFTLLSEEARARGITIQELLRAVVIPDWFKAKYEPLPRHNPISERRIREEEPVSPYSLTNKLRY
Ga0307477_1000029469F002993GAGMAYGLAEGFRKTAVRLGGKKKKKAVVIATFGNHFSLNDALEKFRKEGLTFDTEKGHIVKIYLDKNTKERAEQVRSIIREHFGYVEPL
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Institute for Fundamental Biomedical Research
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