NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000549

Scaffold Ga0307477_10000549


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000549 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40766
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005204Metagenome / Metatranscriptome408N
F082487Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000054933F005204GGAGMSDQNLFRLVHLPPDLARQLRDSVDEAFQGLGTATAELILHYARRRHNVDMKELPVGIDELDNALKEILGTGRRMVVNHCAEILSRRLGKDVRPKSEKLSDIFRQVAKIYQRRAATGDSPATLFGDAESVEETVISHNVIE
Ga0307477_1000054941F082487GGAGGLGFRSGLWKLKRSLNNLAFRMSFIKLAPGSSRPLLPVAEVAIVGFTIFVLAGGLFVLSQPVQGLLNVQQGLQWVYPGDVNNQTTLEAVFSALVYILGFFGVYMMFMSTRFVYRPKRAYGFLAFGMMLTVIFILSLYFVIYNKIGQL
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