NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000610

Scaffold Ga0307477_10000610


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000610 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37568
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (67.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000916Metagenome / Metatranscriptome835Y
F008609Metagenome / Metatranscriptome330Y
F035230Metagenome / Metatranscriptome172N
F081135Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000061012F008609AGGAVNKTFLVLGVVIIAAGIATYAVSSYTDLLGGRTHHTIPLGGLGLAVLGVLIIVGGVMMGRPAAGAAAGQFKCAQCGAVFGSQAALDQHTRDKHSAKAKS
Ga0307477_1000061031F035230GAGGMSSVLEVKMINEGDNVKLVVPRSYFQQLGFEKGDTLLVTLEEERAKARKKHAKPRTQRQHRHN
Ga0307477_1000061036F000916AGGMTQQASVKHSRNLAEQYALLRKTLAHYLLLQVGTFVSAFGYDAIGPAMEILTNKKAELKIQEIRKRSNDGPNAAAEALGDSLAESMGETFRSDYDIETGNGFKTVNLRVCGCIESVTAQAEDYGLTQTQARSIFCGTCMSSYKKAAEGLGLGFKGRLRGEHGCSMGFSSGQSNSNALKSGGP
Ga0307477_1000061049F081135GAGGLRKLERLVDEFGQLNFQKASGPSDERIVRLLDRASFPINGSISSELASAAVEKIKDIYFTLELWYFSLRQKVRLLLRRSSMMIEYDLLEVVNEFTDFYTEFVEKVAEGTLQLVGRGDMAGLESERESFSTFKTRLSELRGRTNAFLQAVHDDGLPISETKVRALETDPWLNSARASSEPLDSAGRQNKMLS
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