NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000745

Scaffold Ga0307477_10000745


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000745 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32107
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F013287Metagenome / Metatranscriptome272N
F031048Metagenome183Y
F040029Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000074510F013287GGAVKPVRIRDSTFLPVPRDVAELLRVMASKICSVNFKINEKECQLIYSFAKSVPDLKETVSDPRVLLAG
Ga0307477_1000074527F031048AGAAGMESIKHILGLESERQVRFGVLLVSTGIIIITSLLAYNRISYEFPLAVGNTGQSALGPSTSAGVGIVYAMIVVAAILGFGAVLSIFGSLHNVSNRITNAVRESLPTNSNSEPERKDEWEQVSTKTETKATDDEILKALWQSKDKKPTTAE
Ga0307477_1000074528F040029GAGLLGINIFLAVSIISALLDRDLPSILRYLFQGAAGAGIVELLLSQGLTGATRVWAGIVYLAFALSSMVGMNIRLAIVRRGTNIASIFSQMITVPIVMISALFLSSFLENGGELVFSTASIVTIAVAVLVANLSIFGLLREYSRLGPTRSGGLISFPIGPAPVSGDVGPGLKSHRSSEEGEDWEESPTKKEDQ
Ga0307477_1000074529F002368N/AVPIQLSPTRIKGTKYLLIPKDLVQLLEIDDESVLNLTVEDTAKGQRLIYSIRQKSSSNVG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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