NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10003377

Scaffold Ga0307477_10003377


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10003377 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11908
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F002750Metagenome / Metatranscriptome533Y
F018221Metagenome / Metatranscriptome236Y
F044929Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000337713F002750AGGMLNWLHKFLQTKYVGLLEGEVARLRAENRALTNSLLATAGFPPVDYPEPAKPQPLPRLRKRSWHQIQAWREAGAARDSVSGGNEA
Ga0307477_100033773F018221AGGAGGMGRTRGTQTVRLILPTQRDVLRDVMLTAGKYGAWMTLRELARLTRYGETSISAQLRHLRKAKCGGFVLEKRVRKPEVVSSEEHFVVWEYRLTPRRAFAGKRQESRRRRRQ
Ga0307477_100033774F000188GGAGMSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKFLWRPDFRPRLAEWVADFALAGQAALEGPDCASRMVLFRLYYLGLAPYENARHFLGLSEHSWVNWSEEVRRRVGKELLRRGMFPPRKYFSNAA
Ga0307477_100033776F044929GGAGGMKRTLYIASGISVLFTTLAFGHIMVHDTAHIMSHHDGSAVFLIVHTILAVAFAVLSLIGAYFLLTGWRRQSSN
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Institute for Fundamental Biomedical Research
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