NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10022560

Scaffold Ga0307477_10022560


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10022560 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4301
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017016Metagenome / Metatranscriptome243Y
F045289Metagenome / Metatranscriptome153Y
F064967Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_100225601F017016AGGAGGMSNEAVTQITDHEYTVEFDGKETYVMHNGVKLAMRRDDRWVSIEPGITVRDIVADGRHGIEVEYRRVTVH
Ga0307477_100225602F045289GGAGMRKISLCAAGVAVLILIGVGTWIGVGTGTTPAFAASTISPLEMMTTVKGLPTSHYIDYSVVFN
Ga0307477_100225606F064967GGCGGMWNERKMPERWYGLLRERMQVEEQRMRVIKDGDIIEHDDLEQLIAEADSLDREMLLVMRQAIAGALVREAA
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