NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307475_10001799

Scaffold Ga0307475_10001799


Overview

Basic Information
Taxon OID3300031754 Open in IMG/M
Scaffold IDGa0307475_10001799 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12771
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055023Metagenome139Y
F089190Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307475_100017995F089190GGAGVTKIIPFRKARRLTPEIVGELLRIHSSCVHDQAGKCPLLVSVSSLTWELNQAANIGNEEDNAFKRHDPMCAARPLSDHDIERIIEGRRLTDSMNEEPE
Ga0307475_100017996F055023AGGAGMKTEDELDAEIAKLCDEGTTTKVEMVNSKPRVTDEHTFAQMEREEDARRMEEACGMFLTAERRFQKLNGHPDKVTDPKVNLAWWESLELVYEREKVVWRLFVGPQPTMADNKLYAKFRDLLLKGSNLKANA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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