Basic Information | |
---|---|
Taxon OID | 3300031754 Open in IMG/M |
Scaffold ID | Ga0307475_10010520 Open in IMG/M |
Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6127 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004042 | Metagenome / Metatranscriptome | 456 | Y |
F009247 | Metagenome / Metatranscriptome | 321 | Y |
F069887 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307475_1001052010 | F009247 | GAG | VKQHLGRQSGVQKVDVSLIDGKVDVTPKEDGQIDPAQLLKAVYDSGVTVAEMDVTARGK |
Ga0307475_100105207 | F069887 | N/A | MRFAKSILLVVMVVAFATYAFDCLAMSTPDAAMECCNTMPCSSHGYEHSQECCKTMPSMHALFVQPASTHSMSFSPVFVAVLTLFNASPVLDSPSNVLTARCHVPPIPPAAAAAPSPLRI |
Ga0307475_100105209 | F004042 | AGGAG | MNTRKLALLLLLGSALVPVSQAQIKHIEMRVEGMT |
⦗Top⦘ |