NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307475_10043110

Scaffold Ga0307475_10043110


Overview

Basic Information
Taxon OID3300031754 Open in IMG/M
Scaffold IDGa0307475_10043110 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3353
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003435Metagenome / Metatranscriptome487Y
F011329Metagenome / Metatranscriptome292Y
F013828Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0307475_100431103F011329N/AVTHGFYIQFSGNLEACRTEARISRPSAQPDDALVALVYETSRGFIVNYFGSALANPTLAGLDAAIAEARAELLHYLNRRGENPPVGITRPGLSLWLTERDDETVVGLPLK
Ga0307475_100431105F013828AGGMSKWRYAVALPLLISLSGCIEITTYVSPSASGTVIDAASKKPIEGATISVDDHPGLFAQTNSAGQFLLVPTTRKTHIFALAPYESLPPDGTVVVSADGYAPREIVVTGSANSLLVALDRV
Ga0307475_100431106F003435GGAGVGAGHPCARPLNFAVRDLDMRLTPDTPALRRWRLWVGAVLVAELCWFALLRPRIAGNFRTVLALALLPLTVVGYVYLMASVSAYLVNRDWEFRLRQMIVIMLGLSVGCFVFALLWLAKVHFEAELG
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