NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315328_10100649

Scaffold Ga0315328_10100649


Overview

Basic Information
Taxon OID3300031757 Open in IMG/M
Scaffold IDGa0315328_10100649 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030886Metagenome184Y
F067640Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0315328_101006492F067640AGGAGMIEVGSLLRMKYSDTTWLALDEIAETVLVVNQKTNRTMWANKSAFEVIA
Ga0315328_101006494F030886AGGAMSYHGYPPSYTKTGIAVVNPLIRIERKLQKIQEVLDNIEEDSVLTAADLKIMIQRTIDEDEDR

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