NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315328_10253923

Scaffold Ga0315328_10253923


Overview

Basic Information
Taxon OID3300031757 Open in IMG/M
Scaffold IDGa0315328_10253923 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1029
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049037Metagenome / Metatranscriptome147N
F060975Metagenome / Metatranscriptome132N
F097503Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0315328_102539232F097503AGGAGMVGHTRTEMDCTTEAVVLFEDVVEVFEHRMIEGCIANEFKCTYTEKTGEFVAEINGKFYVAMIREKK
Ga0315328_102539233F060975AGGAGMGKTIRRNPVARNSEQFNKPKTVRDRKKDFYRPDAKREFEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED
Ga0315328_102539234F049037N/AICVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPLAITVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFYFLRHLDGAIEDLHEGKSSKRLRYAKAACGQVVLEAKARESTTRQYDHLGAVVRRQMGRNVAALRSDEDQGEE
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