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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10000939 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39865 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (85.48%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001599 | Metagenome / Metatranscriptome | 665 | Y |
| F001706 | Metagenome / Metatranscriptome | 648 | Y |
| F006544 | Metagenome / Metatranscriptome | 370 | Y |
| F008808 | Metagenome | 327 | Y |
| F009064 | Metagenome / Metatranscriptome | 323 | Y |
| F011647 | Metagenome / Metatranscriptome | 288 | Y |
| F050167 | Metagenome / Metatranscriptome | 145 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_1000093916 | F050167 | AGG | MTTTTAEQIENYLASISLTLADLSDELATIQFDLEDADGYEPRGTVLKALPNQTRFKPKSVWVSLGNGKYQHLTGEKGLVAKHSRLDGYTSVVFRP |
| Ga0315907_1000093929 | F008808 | AGAAGG | MNKEIPPCPQCGERFENVFEATDHLLEDDEEFDPALVLPNGARLMIGSLLRCLFKYADKPEQIKSITQSTYMTLFTAETQPEAIKDIVEEMIVESQMMEIDDEIKQLLEGGKQ |
| Ga0315907_1000093932 | F009064 | GAG | MLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNVLHKKRHSLPDVGNNVEVRSIRTQDSIPFWRKDEGKVIIGTKCLDLEYFSEVEIFGAAYPEEFTKPEYYDSYINGWRIPISGFTHE |
| Ga0315907_1000093953 | F001599 | AGG | MSNKDSVALVWCDNGMVDGKFMQGVADVMLKSGIEFATTLRSQGNQIARQRQTTIDYWYDKTEHEWLLWIDSDVVISPEKFKLLWDNRDVEKRPLITGVYFTTDTPEEPLMAPLPTVFNFVNNGDGGFGLTRVHPLPVNQLIKVDAAGMGFVLMHRSIVPKLREIAPDGQLFMEMGRGNKFIGEDIFFFALCDKAEVPLYCHTGATVPHMKRFSFDEHYYRAFFGKPKEEPKSKLVTPNKKIITPR |
| Ga0315907_1000093957 | F011647 | N/A | MSSGQRKRHDGWNKSIIRDGLVVILRKDGTEKVRLDPKTKEVIKGNK |
| Ga0315907_1000093960 | F001706 | GGA | MAYHWQDHPVEVEGCFGCKVMNLQVNAGDAKRDIPDKKWNAELQAYRDARAQGIQPAGTTMRHVEEAHKASEILGKAYNADTMPKTKDITPKAAAVMKEIGQV |
| Ga0315907_100009398 | F006544 | AGAAGG | MTTLAAIQGDGWCVIGSDSRSSDDSGRPIEMATHKIVENNGVLIAGSGSGRGSNLLQFGWKPPRPKLSEDLDVFMTKRFIPSMRKLFIDAGYDMKEDGDYASHDSQFIIAIRGILYPIFEDYSWDRDVRGIYYSGSGSDIALGAMEAYRVRSTNDADKAEKIIRKSIEIATNWDIYSSGPIITKIQYSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |