NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10001023

Scaffold Ga0315907_10001023


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10001023 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38421
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (41.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010762Metagenome299Y
F010994Metagenome296Y
F015082Metagenome / Metatranscriptome257Y
F021761Metagenome / Metatranscriptome217Y
F025689Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100010233F015082N/AMNDSDIYWTFATAHEYGGGFFQALASAGLKADPGNKRRILTAFPEMIATYGTASRLHKALRGDVLL
Ga0315907_1000102332F010994N/AMDLPSLRHFSNSGIYFVSSDPVEALVGEAWVPAVYTDKGWATADGASLLLGIEEWRNASEERQVTKGDLSQHQSGDEGGQASKTGSSNRPRQSRKKPQA
Ga0315907_100010234F021761N/AMITHPIVNRITVLVVMFAIYAAGYAGGRDQATLAHNQHPACNVNLKP
Ga0315907_1000102361F025689N/AMEAQFHGAANASALRTLHAKGDWNGLLEYALLLAEQEASQRSQIHWLAREAMQSCGIQEWHRAAAHELLAGSD
Ga0315907_1000102365F010762N/AMNETTIKAAFSDWWRDSYGVPPGPHAVMTHVAFAAYLLTLLELMNDE
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Institute for Fundamental Biomedical Research
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