NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10001207

Scaffold Ga0315907_10001207


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10001207 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35549
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F005175Metagenome / Metatranscriptome409Y
F031850Metagenome181N
F081080Metagenome114N
F105047Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000120722F031850AGTAGMHQDDDDYYNANVKAIVFIERDNSITVKFTGFQDKEHSAIFSSWLMMLLNIENAIINDSQSKSIH
Ga0315907_1000120735F005175GAGMIDQELTVEIVCEMYEEKILVLKKEIDRLNEEVQALNLQLKKERENNEIKTSXFIFWHRW
Ga0315907_1000120736F105047GAGGMKHINYDKVIVEWLDISSDGCDEAWNTEEQLKDLVPALCTTIGYLYEDNKDWIKTFATYSFNSDQTLDFGDCVCIPKGVVRSIRKLEN
Ga0315907_1000120741F004111AGGMIDKIKQVNDLCAANGSYVNQHGKKTVSAWSKIKYFREVFGTEYGINCMMIEHTDRYVLMKCLIMGYDPERIISTGYSKQYRDKPGYIEIAETFAITRALSFMGLMLQDITSKEEYEELDIPVHPMDIKGTTSANSNRYDVEAVQKILKNINYAPHTAKLDFLWRANKDLLEQIKINDLNTYQSIVNKFDSKRDEITTQNEV
Ga0315907_1000120756F081080N/AMVNGNCLEVMSTGKKFDTFRECTIAGYEFIAEQNKIFPIDQFEKTKPSFHFDCIETAEQS
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