NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315907_10002117

Scaffold Ga0315907_10002117


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10002117 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25658
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (87.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009328Metagenome / Metatranscriptome319Y
F015839Metagenome / Metatranscriptome251Y
F016520Metagenome246Y
F032632Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000211710F016520AGGAGMNPTPACPQGIIEFECELEGVDLVCHLEYIPEEIGALDSRGLPNEPDYGETMELVSAYIKGTDIDIGHLLLQGLVDHITTTALEDYKNDDL
Ga0315907_1000211712F009328AGGAGMDDGYYCVICGRYIEAVDGVVVHDAVPHPDMAFDDEEKPQ
Ga0315907_1000211714F032632N/AMKHSKHFYYPEVKSARLTARAQAGLDLLTALAIGISLAALLVAWWSA
Ga0315907_1000211715F015839AGGAMNASYTAHVATDLYNAGYSCDGHPFIAEQYYVVIENVAGRRFRHTATFNGTQEVVCPESGDSYFPDLRQEASAKAVRLSIRVEAALQSGKFLSPTFWEEIDPAYGSDEYAYQGTEAKRLFAEKAAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.