NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10003962

Scaffold Ga0315907_10003962


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10003962 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16938
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (70.21%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Associated Families16

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F000450Metagenome / Metatranscriptome1126Y
F001019Metagenome / Metatranscriptome804Y
F001507Metagenome / Metatranscriptome681Y
F002071Metagenome / Metatranscriptome596Y
F004666Metagenome / Metatranscriptome428Y
F006744Metagenome / Metatranscriptome365Y
F007470Metagenome / Metatranscriptome350Y
F008132Metagenome / Metatranscriptome338Y
F014250Metagenome / Metatranscriptome264Y
F015988Metagenome / Metatranscriptome250Y
F038205Metagenome / Metatranscriptome166Y
F043940Metagenome / Metatranscriptome155Y
F057310Metagenome / Metatranscriptome136Y
F085710Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000396211F085710AGTAGGMDFNEYYDDIYLEIYEEFGASAVSDPDYAEQLAKDKGVR
Ga0315907_1000396212F057310AGGAMKITYSVWQGSIIKGSGFTAKTMKEVIKTIDELNEGGLKPKFEAFISKVEQDNK
Ga0315907_1000396213F008132AGGAMTKWDTIQEDIKDAYAHLAEEEMYENLMAEEEDVFGFVKAIQIDHLTDDELDEVFNMFGD
Ga0315907_1000396215F000447GAGMGFIEFARIDEMGVEWVDLDDATPQELLDFEIHLFQEGAI
Ga0315907_1000396216F006744AGGMNLDEFKAYVLATRQASKAEALSVLSATIQETKGKEN
Ga0315907_1000396217F038205AGGAMTDLKEIIAVACDECGGAGFLFWGDENNYDVEQCDCALDDWGL
Ga0315907_1000396223F002071AGGMLEIGQTLTTTKSGVTGVIKAIDNHPSGVNRVLLDVNGSERWTSVSN
Ga0315907_1000396225F043940N/AMLYFVSLLTESNKMKNRFRVEIYDENKNNDVTIYSEQGVDKEYLTELVYSNIRGFDGNVRAYVYDNLRKKKVTAVYVPMEIISRLKTKIPSAPTNLGLV
Ga0315907_1000396229F000311GAGGMYFELTAPNQLALARAIWDAELNGLDPEKMDSLTFNIGTGSIEKVSRLRDRFNLTESYVSEFEPTGYQRS
Ga0315907_1000396230F007470N/AMYQSLNLQDIKGVKVDYQDGFEDGVKFAREIIVNNIRLWAETSDDGPAFDEIADRIEFGKVDYDL
Ga0315907_1000396232F000450GAGGVGDRANFGFVQPNGETIVLYGHWAGSNMLGKLADAVIAARPRWNDPSYATRITISQLIGDQWNMETGWGLHVNEISDNEHKIAIVDWEQQIFSLHEEDDFRNQDNKVRGMKNQAIFTMDLSTFCEKYALNEILTV
Ga0315907_1000396234F001507GGAMMKTKPYTVDELITTIYEDNYSHIEFIENMNGGDCDCNIHNTMNLIQEYM
Ga0315907_1000396235F015988AGGAGMNKLIKYMEIHIISLEQDLENIAQEMESLDPSSKAYNELDFEYNHWSGQLLNARHFLSVANDILSETKEN
Ga0315907_1000396236F014250AGGAGMQPISMELPDRLQKQVDMGESGTDILHGELKNLMYEAEEQLILAQEEEDRTEEAMDSMERKYWEGQLDGLTHVYGLTYALAFAIDERTKKNG
Ga0315907_1000396239F001019GGAGGMLDYEPTLEIVEIEYSVSPGGVDSYEVYDKLDIPLSVPIYETESLTDAVQYCYNLGQDFIVRTVAAWHRNEDVYANV
Ga0315907_1000396241F004666GGAMTSKREYLTSKGITVGRRGRFSAAAKNALAEAEKNGIKFTAEAPQPKK
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