NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10011939

Scaffold Ga0315907_10011939


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10011939 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8520
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F005054Metagenome / Metatranscriptome413Y
F005479Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100119392F005479N/AMPELINTLKALKKKDHEDKKFFASLKGVEIGEYQEDSNKGSSFEEIELRAAGIHASPNDVVSLQGRFAAQAGFGIGEGLGYIKE
Ga0315907_100119395F000258GGAGGVTANYKLDAMLELRKYLWKELYTRNIFDENDYWSDNLNENIIPIIPVQQVAEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQIMFTIYSTSVSEINEIRNYMTDEFRRMDESARDINKWTDLSNKFKFHTIWVADISPTAPSEELQGFFSAEVILEVKYSRITDNIGRFL
Ga0315907_100119396F001900GGAGLDNSGLLVQASSGLERMMYSNQSGPLKDSTVAQVSAFIYYEAAVISKLTTNNQFKALFTKTMFDQINTDFGNYIDALARSKPKSLHHVYEWKKTGNKTARLFKLNKISEDGLSFKVNYEFTPSRSMVPAATGRRRHMFANKASIMEEGKPLVIRPKNAERLVFEIDGETVFMPKGKSVTVRRPGGSASTNQFTLAHSRFFSGRLVNESIKKSGFQKIFNSSITKALSVPSNIKKVQYSFSPNLIRSQADAALTASFGGAM
Ga0315907_100119397F001229GAGMNSIVDSVLSMNLDVYRQSEIQDPDTGAIVREWNFYKTISCHVKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0315907_100119398F005054N/AMAEILIRSQSPITHQVFWNGDVIVPDSAPLVYLYDITQDPVINPAINPTQLLTMLTSTADENNLGSYIVNIPYQYTERNRTLRLRWIYNISGITVTRDDEVFVVTPYVDFNHVQDIGFSMDSSDPNYKSYKDLVRAERYARKQIEQHTGQKFHLYDDLFLVYGYDSDVLPVPAKIHELHELYARDILLLDTINNINNWNYPVEISESGYGIKINRANLLDNTVYTANGMVPPSIHDYSGIFQSGVPYKVQGRFGWEKVPDNVELAGIELMKDYFSKDTMWRNKYVKNISTFDWDFEYTGDAYSGTGNAYADRLLAEYVLTTKVEII
Ga0315907_100119399F001106AGGAGMSFETLKVSELKKIAEDFAVDTDGLKNKADIIAALAEEGVTWSVYNKTMDKMEEEDMSVEVLPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSDDEAQAIFDKEEGFRLATPREVQEYYN
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