NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10013615

Scaffold Ga0315907_10013615


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10013615 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7856
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F029568Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001361510F029568N/AMQNRYDLTDTHIIVYYQSNLEFEKVRELCLEEDNWLRYNYTKENLVVEQHTGYGVVYQTSTGKPMVMGGVFNDGRYPKNVAKMINRLYTFPDFRMKHTDMTDGFRVTCSLIDKLISINNYDLYLITMQNRNRGGKRWWDTWVKHMDIASKGKWTLGYGYLQTCPWPVQKCWQNFVYLETTPGSFQKWNPNTITDQEWSQLEEGT
Ga0315907_100136156F004256GGAMKYNYYYNDVPGVGLCRNNLIYTSLISEDKKTFVQWYYNDTEYHKGHNEIVDSNLMAEKFQRELHFLSNMAYHNPSMVPEILEVNIPERKIYLRIDGSDFWNRAGCDTSNYDNIVPDWQEQMLKIIQAHKERGWYKYSMHPSSYFVVDGQLKSINYFFTYSSNEGPISIADHASHIYSTRQDIMREQIEQMGISWEGKEPLDKLQMLCFESFRSNYNDDFIEKAKRIYD
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