NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10017212

Scaffold Ga0315907_10017212


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10017212 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6803
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F070119Metagenome123N
F072347Metagenome121Y
F081267Metagenome114N
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001721211F030094GGAMKLRGIFEGSFESVWSMEVPQAEWDSYLENHPDFDENDRDDITEMWEHFKSIGCYDEVDDTVDTDVFMTGIETYGVDVDVNE
Ga0315907_1001721212F093864GGAMYFYDVEFVLEAMVIITSVGFDESGLSDEFVIEKARQNIISYYKIDPEVLHLQDVIVHERDN
Ga0315907_1001721213F016662GGAGMTYLVATTEVIYSEEALIKMMLETGEYGIHGYPISHEAMIEFVKDNEWQIEHNLFLDKFNVPAQISIKDEDGTDLFFAKNRLEIV
Ga0315907_100172123F072347AGGAMDNRTKAEILVQFTQDEFNSGEYEEFFDYNDLGIPLSIAITQDMVILTDAGEQLLEETWIELCNLFEADPNGEYESIDDLVGN
Ga0315907_100172126F070119N/AMWRRCKMNLNSYSSYDFVIPNCLEPGDIIQWEDEIYTVKSFDLLSDGFIIFAIDEMEEDVELLIPDNTVLSLMEEQ
Ga0315907_100172129F081267AGGAGMSYEYHWVVVYDEDWGAFMVDAETTLLNLAEHPGVIYNKTTGRWEFAEEDSELEAEYQRLEEILAYQLTRLDIPKKV
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