NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10024387

Scaffold Ga0315907_10024387


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10024387 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5543
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025745Metagenome / Metatranscriptome200N
F090395Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100243877F090395GGAMNEYLVGFNNDGILVTETVSASDPVQAKAEAQPLHPDFQIIAVKLLKQGGTNG
Ga0315907_100243879F025745N/AMPANAPTLTVSFSNGGAFTAVSADLLLSVEIRRGRQYQNDFLEAGTADVVLNNQSGAFDPSNTSSPWYGILIAGMQVRIQGNSTTIFTGYLENNEVNQGIYPTVSLTFVDGLAQIAKAIAPALATSSFQEAASARATRALDLAEWTGGRSLTGTTVMQKTKQNMSCLEMLEQCANCVGGRFYVSRSGVATLVPLADKFSRPTRLLFSDQGDANSVGYDGIITNPGTDYVYNEAIVFRGPKKEQKTAKFTSSVSTYGLKSKKLDAPILNETSAANLALYAARKDADAVVLAEQIDFTAIGIGALATDMLETELNDLVQVKRLTYDGRNITINCVVEGLAHSITADNWRVSYFTSVVDPYTITI
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