NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10025199

Scaffold Ga0315907_10025199


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10025199 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5440
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F012975Metagenome / Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1002519911F000671GAGGMEKILCYSCNKTKNQLHVRRSSLLPINLLMCETCISSKFEPRWVVILAGRQSGSEFVRDFVLKKRYIGNDISASEILV
Ga0315907_100251997F012975AGGMLNLTLKGVEVFMNRSKTKSQESFWDNYDLIIWKKDSGGYTNIKGMFRKDSWGTAETISVDDHGIWKLPLKYVKHFK
Ga0315907_100251999F000473AGGMTFIDRSKNHFKFGVNEWTGDPNKPVFYTDEMRKKVREIPKPTYDLLIDIVMYPEFLAIRLYEDNFLQFSGNKKEMVIDYVSKVKKLIESYGVRCELEGAPSDRVL

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