NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10026955

Scaffold Ga0315907_10026955


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10026955 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5236
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022870Metagenome212Y
F024101Metagenome207Y
F033009Metagenome / Metatranscriptome178Y
F063633Metagenome129Y
F072279Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1002695513F072279AGGAMMTRQHFEKVASLLKEFKDEIPQTTFEEIVLEFGDLFFAENKNFNDIKFQEACGITWPTFVRLR
Ga0315907_1002695518F022870GAGMNWNRLTRRGKNLVIVLYTILMTLLLVGVWNKYDRKGCVDKYTADILATQFLYGEGEDVDRAITAIYNNGGWITDEHTPDVEVIFPCLKNEGLV
Ga0315907_100269552F063633N/AMSNTYKDRKVQHVQGLRRSGASGIHKNKVKDRQKRLSSAKIWKDYLKDENE
Ga0315907_100269554F024101GGAGVPKEKPIHKMVEEVFDKDVTQDLIDELAEEKTFIVNTMKKFVETDEIWQQLVDNIEARKAFLVNLQMLFLNDIENQTLIELATTKWGND
Ga0315907_100269559F033009GAGGMSNSTQLWYAGTITKFGDIQKIYDDETLWTLESKDGSYASVILNKEMIASWRCEGAWNLARQKAESLILEREQLEQEGWVTN
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