NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10034162

Scaffold Ga0315907_10034162


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10034162 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4565
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059903Metagenome133Y
F064658Metagenome128Y
F067664Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100341622F059903GAGGMKSHFIDIVKLMESPSTRSPWYIVEGPKGKHYVSALGGRAAKGLREGTQLKLYRNEGKQMSAYVLTR
Ga0315907_100341626F064658N/AMINILTRKANQIGDAVREFNESNLPTDTLPDTATGEHAVLGKDANLPLIVKELAPVQLENIQRERDKLMKRLDEITQYEATLHALLDALK
Ga0315907_100341627F067664AGGMKINYEELEEMYEAAPTRGLMRKSTEPVGSLTDNRRKVKPNRDGAHKRLTDWVKYND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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