NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10041579

Scaffold Ga0315907_10041579


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10041579 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4083
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F006841Metagenome / Metatranscriptome363Y
F078427Metagenome / Metatranscriptome116Y
F097194Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100415792F097194GAGLQTLETMQKKERENKIFLASLQGVDLRDEQDQKGPTFDDIRLKAMGINASTDDVVSLQGSFAAEAGFGINAGLGYSKE
Ga0315907_100415793F006841AGGAGGLATTVYDVEEIKLQNGETIQLKPLSIKQLRKFMAAMNKAQEATTENESLSVLIDACAIALETQLPELVKDRDALEEALDVPTINRILEVCGGIKLDDPNLIAAAVLAGQN
Ga0315907_100415795F000258GGAGGVPVNYKIDAMLELRKYVWAKLQAAEIFDPEDYYSDNIGETLVPIFPVQQQAEMSQFLSGKKHIIYDKIGVAYDTLWLICNEQILFTVYSTDVSEINEIKNFMIDEFRRMDESAVDVNRSSGFNSEKFKFHSIYVSDMSPTEPSEELHGFYSADIIIEAKYSRITNSSGRYV
Ga0315907_100415796F078427N/AMVKSSGGVLKESLVAQVSAYMYYNVQVISKLTTNVAFQNRFNEVIFNQINKDFAEYVDSQARIKPKSLHHVYEWRQTGDPGSRLFKLNKLDSLGLGFSMTYDFLPSKSFASAEGNRKHVFVSKASVMEAGMPLKIAPRHSKRLVFETNGYTVFMPEGASVVVKRPGGTSVKNSFMMTYSKFFRTNLVNVSIKRSGFQQLFNRSMTRALNLPSEIKTVKYSFNPNTISIQADAALSAAFGGAL
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