NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10058108

Scaffold Ga0315907_10058108


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10058108 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3380
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F003965Metagenome / Metatranscriptome459Y
F081245Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1005810812F081245GGAMIDYVKQLELKNYLSDEEIDPLAKRLDELISKGEYK
Ga0315907_1005810813F003965AGGAMNSTIIQVCKSHVPNKSAISDVNDEQFTFCEICENNIERWYNDTDPERLPMWSNWTVSK
Ga0315907_100581082F000808AGGAGMLDREYNYSLTTSYDGELVHTLRVSDMLEAVDAWNKCVDFGDAKEYATYNLSDPTGKMYTKNFYRNGVVNGK
Ga0315907_100581088F000447GAGMGYIEIFRMNNEGAGWVDLSEATPDELFNLELGLLNENALFNTPEAD
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