NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10069662

Scaffold Ga0315907_10069662


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10069662 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3049
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024535Metagenome205Y
F033362Metagenome177Y
F105026Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100696624F033362N/AMKMIPITQFLEVIKKQGAIGVLALWLAYTHFEVQDVKARLYNCLDKNEYYNRKPIEEKQPTLPALKNDTVAVLENKSRKLAKK
Ga0315907_100696626F024535GGAMAKKKITIDTDKVDVNLEKDGTNIKLDIDTKNVDIHVLKDEVNKEFKLDSKNIDIEISKTAEGLEVKVESKGGIWKLIAKRIVKFIVKRFKVGK
Ga0315907_100696628F105026N/AMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNYTK
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