NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10084670

Scaffold Ga0315907_10084670


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10084670 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2731
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F099312Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100846702F000311GAGMYFELTAPSQVAFARAIWEAEMIGLDPQQIDSLTFNIGTGSIEKVSRIRDKFNLIESYTSQYEPTGYTGR
Ga0315907_100846703F001043N/ALNLIHHNTSQQDTQGDKMSDYKDGFADGYKFAREEMMEKLSEIDITDIDSWILDRLSEMIEGGKL
Ga0315907_100846705F000450GGCGGMGDRANFVFVQPNGHSIVVYGHWAGHNMLARLADAVTAAKPRWGDPSYATRIAVSQLIGDQWNMETGWGLSVNEIQDNEHKIAVVDFQQQTFSLHEEAPYADESNKVRGMNNEHIFVQDLNNFCEKYADRLLPV
Ga0315907_100846707F099312AGGCGGMSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQFYADY
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Institute for Fundamental Biomedical Research
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