NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10124964

Scaffold Ga0315907_10124964


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10124964 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2193
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101249643F043404AGGAMIDTDNPLLQTLADDFVELHNVGGIELEQWETAYKFVKHFYHTEEMVQIIIREKK
Ga0315907_101249644F016662GGAGMYLVATTEVIYDEQYIIKEMLATGDYGVHGHPISHEAIVEFVKDTEWQIEHHLFLDKFDVPAQISIKDEDGTDLFFAKNKYEIK
Ga0315907_101249645F030094AGGAMKLRGIFEGTFESVWSMDVPQYEWDNYLEQHPDFDENDRDDIQEMWDYFKSIGCYDEIDDTVDTDVFITGIETYGVEVEIN
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