NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10183280

Scaffold Ga0315907_10183280


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10183280 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1761
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F014849Metagenome / Metatranscriptome259Y
F018352Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_101832803F003393N/AMMRNKMITLEKDDTIPIMDYYKVDVLTAGQLMVDDFILVDGDVVSIIDIVSLPDGYSLEIENDFGEREVIQVDEYDQFDLMMLQ
Ga0315907_101832805F000808AGGAGMEYTYSLTTSYDGELIHTLRVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK
Ga0315907_101832806F018352AGGAMGKFKNAIMEILAHGDCYGAGWQFVGNAINYDVWACECNPYNIPADEIQEYHQLFKTKEN
Ga0315907_101832807F014849N/AVMLTNWDLLAIIIALLGCLTVMCLFWKQNIAQQKEIRRLRNELRKALKV
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