Scaffold Ga0316219_1000838

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316219_1000838

Scaffold Ga0316219_1000838

Overview

Basic Information
Taxon OID	3300031759 Open in IMG/M
Scaffold ID	Ga0316219_1000838 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	37872
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (86.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054028	Metagenome	140	Y
F062381	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100083813	F054028	GGAG	MKLVPTSEKVTIKWFAVLSDGSKMRNNKGFIHYAWDVQCSCGWESRTGGAIKASVARDVDKHKMFVHDYEFVVA
Ga0316219_100083816	F062381	AGG	MKIICKENHWSVKDGQLILDTPEGQELAKKVITTLEAQIRLDIYEKICAMPLTTNRKQLVKLGIDNVALMVQDACAQIALGEK

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