Scaffold Ga0316219_1004237

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316219_1004237

Scaffold Ga0316219_1004237

Overview

Basic Information
Taxon OID	3300031759 Open in IMG/M
Scaffold ID	Ga0316219_1004237 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10959
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020296	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_10042375	F020296	GGAGG	VRNHTLMVLLAAVFLSGSICLAQSEAVAPLRANEFTDRLYLGFDHTRTDYALATPNGDELATTNGVDAEYDWRSKEHLAYIGTVRYGKGNPFDQSLITSAAGASYLFHFSRYEPFAHAMGGYTRLASQHAAGGMYLSNVNSGFLMIFGAGLDVKLNDRWGVRALTLEDLYLPFGSARSTYWSVGSGVLYNLRRTR

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