NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0316219_1011061

Scaffold Ga0316219_1011061


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1011061 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5096
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0316219_10110611F003764N/ALAGAQIEAAGLYRCLKIVRLWSQSSTLPQSRHDEMIEEVQRLANLYAATLFEIGSAFGLRAADELKVRIEAACVLDDWECPPAEQGLLFPISNAPTTADSPATPRK
Ga0316219_10110612F042119GAGMEKIREVNPARLAWGTFDHQQNDYVNEGDIPASYCADCIAMGQPVRKPFRMDGEMWVTIALCNHGARAYRLCPLRIFSGIPTTYRDKSGTSECAEVARNDPNGFYDRMTVKHGGQEFVLCGPEVQIVAGQQEDVPTPQVQLALF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.