NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316219_1051071

Scaffold Ga0316219_1051071


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1051071 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1698
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001991Metagenome / Metatranscriptome607Y
F008414Metagenome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0316219_10510712F008414AGGAGMSQVIIYANSNGGVSVCVPTGELPINEVLAKDAPAGAIIVDDSTLPQGADSVFFDAWKLNGSTVTVDFPTAQVHKLRDFNAAAVQVAQKRQLNTLAGIANTPDDATFTAELANGRTAIANSKTTADLIAIVNPI
Ga0316219_10510713F001991GGAMAIFNKNTLTQVSGFDNPIIAGELVWDQATYWNLVITGSDNVTPVDLTGATINAQIIRREVSNIQDTRYGLSFDIADYSPTPTPVSLTVSNRVDTAGTFTLTIDSAAWGLMSSDPELEINATNCVGYSGRIKISFPASGSTPANDYIIFLLFLVRSDGIIVE
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