Scaffold Ga0316219_1057251

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316219_1057251

Scaffold Ga0316219_1057251

Overview

Basic Information
Taxon OID	3300031759 Open in IMG/M
Scaffold ID	Ga0316219_1057251 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1580
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.0411	Long. (^o)	-89.6861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F038926	Metagenome	164	N
F050812	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_10572513	F050812	GGAG	MNEVLMSGFGVSHKGVGLSVNTTHDGTTITFTSGEVIKDILTDPRITDNGKSVGERNVEWLHEKLDGWIKQNLEKSE
Ga0316219_10572514	F001629	AGGAG	MKFSQGKLADSLVEEMLELIHKYDESLYTATAIGCLELVKQQLIIDVMESENE
Ga0316219_10572516	F038926	AGGAG	MRFWLYVIKAVWRFQMGHWYVWRDVPTDVVRKVASLWYFDRKEEKNKLVYEAYKEYQLRKLKEKNT

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