NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318535_10326432

Scaffold Ga0318535_10326432


Overview

Basic Information
Taxon OID3300031764 Open in IMG/M
Scaffold IDGa0318535_10326432 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026928Metagenome / Metatranscriptome196Y
F035520Metagenome / Metatranscriptome172Y
F068351Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0318535_103264321F035520N/ADTGVCDGRAVMIRRVSGADVSLCAPCAVAQGVAEMKL
Ga0318535_103264322F026928GGAGVPVLVGVPGLPCPFFMFGQLCVALAEADGEGVAAVAADPLLVAVVPDPDDDVDEVVDTGADELLVAALATAMLTPSPTPSAPAPTAAAIMILPRLDLNVSSSG
Ga0318535_103264323F068351N/AYQISALAPSGNAVTGIGSLATQASQEVFTVTLPAR

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